PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00148.1.g00590.1.sm.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 214aa    MW: 23305.2 Da    PI: 9.9597
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00148.1.g00590.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.71.4e-1872123256
                           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                                    y+GVr ++ +g+++AeIrd + ng   r++lg+f+++e Aa a+++a+ +++g+
  Zpz_sc00148.1.g00590.1.sm.mk  72 VYRGVRKRP-WGKFAAEIRDSTRNG--VRVWLGTFDSPEAAALAYDQAAFSMRGA 123
                                   59*******.**********44465..*************************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.6E-3572136IPR001471AP2/ERF domain
SuperFamilySSF541713.73E-2272131IPR016177DNA-binding domain
PfamPF008471.6E-1372122IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.9E-3072130IPR001471AP2/ERF domain
PROSITE profilePS5103222.93272130IPR001471AP2/ERF domain
PRINTSPR003671.1E-127384IPR001471AP2/ERF domain
CDDcd000184.51E-1873132No hitNo description
PRINTSPR003671.1E-12112132IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0009873Biological Processethylene-activated signaling pathway
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MVSSSSNHPR LTTGIVSFLA RRAMTTSQPL PPGDSSTMRH HPPLLQDMIA QDKVAATASQ  60
QEAAAATERE QVYRGVRKRP WGKFAAEIRD STRNGVRVWL GTFDSPEAAA LAYDQAAFSM  120
RGAAAVLNFP VDRVRQSLEG MDMDVSGAAG SPVVALKRRH SMRRRPASRK AKAQQPEGVM  180
ELEDLGPEYL EALLDASETS SSSSSSWCRS HHSI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gcc_A1e-2673131664ATERF1
2gcc_A1e-2673131664ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00374DAPTransfer from AT3G23240Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0699804e-69BT069980.1 Zea mays full-length cDNA clone ZM_BFb0349F03 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003559098.13e-59PREDICTED: ethylene-responsive transcription factor 1B-like
SwissprotQ8LDC82e-52ERF92_ARATH; Ethylene-responsive transcription factor 1B
TrEMBLW5APD13e-72W5APD1_WHEAT; Uncharacterized protein
STRINGMLOC_80197.16e-64(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27737249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.12e-43ethylene response factor 1